gridStatsLevel2BVPM: Compute Grids with Descriptive Statistics of GEDI derived...

In rGEDI: NASA's Global Ecosystem Dynamics Investigation (GEDI) Data Visualization and Processing

Description

This function computes a series of user defined descriptive statistics within each grid cell for GEDI derived Canopy Cover and Vertical Profile Metrics (Level2B)

Usage

gridStatsLevel2BVPM(level2BVPM, func, res)

Arguments

level2BVPM	A GEDI Level2AM object (output of getLevel2BVPM function). An S4 object of class "data.table".
func	The function(s) to be applied to each cell
res	Spatial resolution in decimal degrees for the output raster layer

Value

Returns a raster layer(s) of selected GEDI Canopy Cover and Vertical Profile Metric(s)

See Also

https://lpdaac.usgs.gov/products/gedi02_bv001/

Examples

# specify the path to GEDI level2B data (zip file)
outdir = tempdir()
level2B_fp_zip <- system.file("extdata",
                  "GEDI02_B_2019108080338_O01964_T05337_02_001_01_sub.zip",
                  package="rGEDI")

# Unzipping GEDI level2A data
level2Bpath <- unzip(level2B_fp_zip,exdir = outdir)

# Reading GEDI level2B data (h5 file)
level2b<-readLevel2B(level2Bpath=level2Bpath)

# Get GEDI derived Canopy Cover and Vertical Profile Metrics
level2BVPM<-getLevel2BVPM(level2b)
head(level2BVPM)

#' Define your own function
mySetOfMetrics = function(x)
{
metrics = list(
   min =min(x), # Min of z
   max = max(x), # Max of z
   mean = mean(x), # Mean of z
   sd = sd(x)# Sd of z
   )
   return(metrics)
}

#' Computing a serie of statistics of GEDI derived canopy cover
cover_stats<-gridStatsLevel2BVPM(level2BVPM = level2BVPM, func=mySetOfMetrics(cover), res=0.005)
plot(cover_stats)

#' Computing the max of the Total Plant Area Index only
pai_max<-gridStatsLevel2BVPM(level2BVPM = level2BVPM, func=max(pai), res=0.005)
plot(pai_max)

#' Computing the Foliage Height Diversity Index only
fhd_mean<-gridStatsLevel2BVPM(level2BVPM = level2BVPM, func=mean(fhd_normal), res=0.005)
plot(fhd_mean)

close(level2b)

rGEDI documentation built on Jan. 19, 2021, 3:01 p.m.