rPlant: R interface to the Agave and Foundation API

rPlant is an R interface to the the many computational resources iPlant offers through their RESTful application programming interface. Currently, rPlant functions interact with the iPlant foundational API, the Taxonomic Name Resolution Service API, and the Phylotastic Taxosaurus API. Before using rPlant, users will have to register with the iPlant Collaborative.

AuthorBarb Banbury <bbanbury@utk.edu>, Kurt Michels <kamichels@math.arizona.edu>, Jeremy M. Beaulieu <jeremy.beaulieu@yale.edu>, Brian O'Meara <bomeara@utk.edu>
Date of publication2015-09-03 03:23:47
MaintainerKurt Michels <kamichels@math.arizona.edu>
LicenseGPL (>= 2)
Version2.11
http://www.iplantcollaborative.org/discover/discovery-environment

View on R-Forge

Files in this package

rPlant/DESCRIPTION
rPlant/NAMESPACE
rPlant/R
rPlant/R/ClustalW.R rPlant/R/FaST_LMM.R rPlant/R/Fasttree.R rPlant/R/Mafft.R rPlant/R/Muscle.R rPlant/R/PHYLIP_Pars.R rPlant/R/PLINK.R rPlant/R/PLINKConversion.R rPlant/R/RAxML.R rPlant/R/TNRS.R rPlant/R/find.input.R rPlant/R/rPlant.R
rPlant/data
rPlant/data/DNA.fasta.rda
rPlant/data/PROTEIN.fasta.rda
rPlant/data/geno_test.tfam.rda
rPlant/data/geno_test.tped.rda
rPlant/inst
rPlant/inst/doc
rPlant/inst/doc/TNRSVignette.Rnw
rPlant/inst/doc/TNRSVignette.pdf
rPlant/inst/doc/jasa.bst
rPlant/inst/doc/rPlantVignette.Rnw
rPlant/inst/doc/rPlantVignette.pdf
rPlant/inst/doc/rPlantVignette_old.Rnw
rPlant/inst/doc/refs.bib
rPlant/inst/extdata
rPlant/inst/extdata/DNA.fasta
rPlant/inst/extdata/PROTEIN.fasta
rPlant/inst/extdata/geno_test.tfam
rPlant/inst/extdata/geno_test.tped
rPlant/inst/tests
rPlant/inst/tests/ex_script.R
rPlant/inst/tests/rPlantUserManual.pdf
rPlant/man
rPlant/man/ClustalW.Rd rPlant/man/FaST_LMM.Rd rPlant/man/Fasttree.Rd rPlant/man/GetAppList.Rd rPlant/man/ListDir.Rd rPlant/man/Mafft.Rd rPlant/man/Muscle.Rd rPlant/man/PHYLIP_Pars.Rd rPlant/man/PLINK.Rd rPlant/man/PLINKConversion.Rd rPlant/man/RAxML.Rd rPlant/man/SubmitJob.Rd rPlant/man/TNRS.Rd rPlant/man/UploadFile.Rd rPlant/man/Validate.Rd rPlant/man/rPlant-data.Rd rPlant/man/rPlant-internal.Rd rPlant/man/rplant-package.Rd

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