rbrothers: rbrothers: multiple change-point recombination detection
Version 0.0-1

rbrothers is a phylogenetic recombination detection package. Starting with aligned DNA sequences, rbrothers uses the Bayesian multiple change-point model implemented in the JAVA package DualBrothers to create posterior tree probability plots. rbrothers automates the production of a reasonable set of candidate trees and provides trace plots and autocorrelation plots that allow the user to monitor the convergence and mixing of the Markov chain Monte Carlo algorithm.

Package details

AuthorVladimir Minin, Jan Irvahn
Date of publication2015-07-31 19:02:46
MaintainerJan Irvahn <ji26@uw.edu>
Package repositoryView on R-Forge
Installation Install the latest version of this package by entering the following in R:
install.packages("rbrothers", repos="http://R-Forge.R-project.org")

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rbrothers documentation built on May 31, 2017, 1:37 a.m.