rbrothers: rbrothers: multiple change-point recombination detection

rbrothers is a phylogenetic recombination detection package. Starting with aligned DNA sequences, rbrothers uses the Bayesian multiple change-point model implemented in the JAVA package DualBrothers to create posterior tree probability plots. rbrothers automates the production of a reasonable set of candidate trees and provides trace plots and autocorrelation plots that allow the user to monitor the convergence and mixing of the Markov chain Monte Carlo algorithm.

install.packages("rbrothers", repos="http://R-Forge.R-project.org")

Try the rbrothers package in your browser