Description Usage Arguments Value
This function creates two plots from a DualBrothers object. The first plots the posterior probability of each tree as a function of base pair position. The second plots the posterior probability of a break point as a function of base pair position.
1 2 3 4 |
x |
a DualBrothers object |
makepic |
a string, either "FALSE" or "TRUE", if "TRUE" the two plots are outputted into a .png file in the current working directory |
ext |
a string, either "png" or "pdf", when makepic is TRUE determines what type of file to produce |
seetrees |
a string, either "FALSE" or "TRUE", if "TRUE" the second plot show the trees instead of the posterior probability of a breakpoint |
numplot |
an integer, determines the number of trees to display in the second plot (only used if seestrees is "TRUE") |
type |
a string specifying the type of phylogeny to be drawn; it must be one of "phylogram", "cladogram", "fan", "unrooted", "radial" or any unambiguous abbreviation of these (only used if seestrees is "TRUE") |
linewidth |
a number, determines the thickness of the lines on the posterior probability plot |
colors |
a vector of color names to determine the palette for plotting |
threshold |
posterior probability threshold, a number between 0 and 1, only those trees that attained a posterior probability greater than the number provided will be plotted |
... |
optional arguments |
Two posterior probability plots
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