entrez_fetch: Download data from NCBI databases

In rentrez: Entrez in R

Description

Download data from NCBI databases

Usage

  entrez_fetch(db, rettype, retmode = "text", ...)

Arguments

db	character Name of the database to use
rettype	character Format in which to get data (eg, fasta, xml...)
retmode	character Mode in which to recieve data, defaults to 'text'
...	character Additional terms to add to the request

Value

chracter string containing the file created

Examples

## Not run: 
   katipo <- "Latrodectus katipo[Organism]"
   katipo_search <- entrez_search(db="nuccore", term=katipo)
   kaitpo_seqs <- entrez_fetch(db="nuccore", ids=katipo_search$ids, format="fasta")

## End(Not run)

rentrez documentation built on May 2, 2019, 6:12 p.m.