s4vd: Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection

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The main function s4vd() performs a biclustering via sparse singular value decomposition with a nested stability selection. The results is an biclust object and thus all methods of the biclust package can be applied.

Author
Martin Sill, Sebastian Kaiser
Date of publication
2015-11-18 10:48:14
Maintainer
Martin Sill <m.sill@dkfz.de>
License
GPL-2
Version
1.1-1

View on R-Forge

Man pages

BCheatmap
Overlap Heatmap for the visualization of overlapping...
BCs4vd
Robust biclustering by sparse singular value decomposition...
BCssvd
Biclustering via sparse singular value decomposition
jaccard
jaccard matrix
lung200
lung
stabpath
Stability paths plot

Files in this package

s4vd/DESCRIPTION
s4vd/NAMESPACE
s4vd/R
s4vd/R/aaa-s4vd.R
s4vd/R/heatmap.r
s4vd/R/jaccard.R
s4vd/R/s4vd.R
s4vd/R/spca.R
s4vd/R/ssvd.R
s4vd/R/ssvdBC.R
s4vd/R/stabpathplot.R
s4vd/R/thred.R
s4vd/data
s4vd/data/lung200.RData
s4vd/man
s4vd/man/BCheatmap.Rd
s4vd/man/BCs4vd.Rd
s4vd/man/BCssvd.Rd
s4vd/man/jaccard.Rd
s4vd/man/lung200.Rd
s4vd/man/stabpath.Rd