jaccard matrix

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Description

The function calculates the pairwise jaccard coefficients between the biclusters of two biclustering results

Usage

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jaccardmat(res1,res2)

Arguments

res1

A biclustering result as an object of class Biclust

res2

A biclustering result as an object of class Biclust

Details

The result is matrix of pairwise jaccard coefficents between the biclusters of res1 and res2.

Author(s)

Martin Sill \ m.sill@dkfz.de

See Also

jaccardind

Examples

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#lung cancer data set   Bhattacharjee et al. 2001
data(lung200)
set.seed(12)
res1 <- biclust(lung200,method=BCs4vd(),pcerv=.5,pceru=0.01,ss.thr=c(0.6,0.65)
,start.iter=3,size=0.632,cols.nc=TRUE,steps=100,pointwise=TRUE
,merr=0.0001,iter=100,nbiclust=10,col.overlap=FALSE)
res2 <- biclust(lung200,method=BCPlaid())
jaccardmat(res1,res2)