jaccard: jaccard matrix

In s4vd: Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection

Description

The function calculates the pairwise jaccard coefficients between the biclusters of two biclustering results

Usage

jaccardmat(res1,res2)

Arguments

res1	A biclustering result as an object of class Biclust
res2	A biclustering result as an object of class Biclust

Details

The result is matrix of pairwise jaccard coefficents between the biclusters of res1 and res2.

Author(s)

Martin Sill \ [e-mail]

See Also

jaccardind

Examples

#lung cancer data set   Bhattacharjee et al. 2001
data(lung200)
set.seed(12)
res1 <- biclust(lung200,method=BCs4vd(),pcerv=.5,pceru=0.01,ss.thr=c(0.6,0.65)
,start.iter=3,size=0.632,cols.nc=TRUE,steps=100,pointwise=TRUE
,merr=0.0001,iter=100,nbiclust=10,col.overlap=FALSE)
res2 <- biclust(lung200,method=BCPlaid())
jaccardmat(res1,res2)

s4vd documentation built on May 2, 2019, 4:47 p.m.