Description Arguments Details Value See Also
Segmentation of GE data. This function does the segmentation of both CN and GE data.
projectName |
String with the name of the project to analyze. |
chipTypes |
List with the names of both (GE and CN) cdfs. |
fncCN |
Name of the function to use to summarize the CN data. |
The algorithm applies CBS segmentation to both CN and GE data. It also generates a GENESxSAMPLES matrix of CN estimates in order to make it more comparable to GE data.
Returns a list
:
matCNsnps |
The SNPSxSAMPLES |
matCNgenes |
A GENESxSAMPLES |
matGEgenes |
A GENESxSAMPLES |
Check aroma.affymetrix copy number analysis to better understand what is
being done here.
matrixFromRegions
().
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