seqdist2: Distance Between State Sequences

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Collection of dissimilarity measures between state sequences and methods of determining substitution and indel costs for optimal-matching-based dissimilarities. The main function is seqdistOO.

Author
Matthias Studer <matthias.studer@unige.ch>, Gilbert Ritschard <gilbert.ritschard@unige.ch>
Date of publication
2016-12-04 17:05:23
Maintainer
Matthias Studer <matthias.studer@unige.ch>
License
GPL (>= 2)
Version
0.9-2
URLs

View on R-Forge

Man pages

seqcost
Define substitution and indel costs
seqdistOO
Distances (dissimilarities) between sequences

Files in this package

seqdist2/DESCRIPTION
seqdist2/NAMESPACE
seqdist2/NEWS
seqdist2/R
seqdist2/R/TraMineR-checkcost.R
seqdist2/R/chisqdist.R
seqdist2/R/debuglevel.R
seqdist2/R/seqcost.R
seqdist2/R/seqdistOMtrans.R
seqdist2/R/seqdistOO.R
seqdist2/man
seqdist2/man/seqcost.Rd
seqdist2/man/seqdistOO.Rd
seqdist2/src
seqdist2/src/DHDdistance.cpp
seqdist2/src/DHDdistance.h
seqdist2/src/LCPdistance.cpp
seqdist2/src/LCPdistance.h
seqdist2/src/Makevars
seqdist2/src/NMSDURSoftdistance.cpp
seqdist2/src/NMSDURSoftdistance.h
seqdist2/src/NMSMSTSoftdistance.cpp
seqdist2/src/NMSMSTSoftdistance.h
seqdist2/src/NMSMSTSoftdistanceII.cpp
seqdist2/src/NMSMSTSoftdistanceII.h
seqdist2/src/NMSMSTdistance.cpp
seqdist2/src/NMSMSTdistance.h
seqdist2/src/NMSdistance.cpp
seqdist2/src/NMSdistance.h
seqdist2/src/OMPerdistance.cpp
seqdist2/src/OMPerdistance.h
seqdist2/src/OMVI2distance.cpp
seqdist2/src/OMVI2distance.h
seqdist2/src/OMVIdistance.cpp
seqdist2/src/OMVIdistance.h
seqdist2/src/OMdistance.cpp
seqdist2/src/OMdistance.h
seqdist2/src/OMvdistance.cpp
seqdist2/src/OMvdistance.h
seqdist2/src/TWEDdistance.cpp
seqdist2/src/TWEDdistance.h
seqdist2/src/TraMineR.h
seqdist2/src/chisq.cpp
seqdist2/src/distancecalculator.cpp
seqdist2/src/distancecalculator.h
seqdist2/src/distancefunctionsOO.cpp
seqdist2/src/distanceobject.cpp
seqdist2/src/distanceobject.h
seqdist2/src/traminerdebug.cpp