seqdist2: Distance Between State Sequences
Version 0.9-2

Collection of dissimilarity measures between state sequences and methods of determining substitution and indel costs for optimal-matching-based dissimilarities. The main function is seqdistOO.

Browse man pages Browse package API and functions Browse package files

AuthorMatthias Studer <matthias.studer@unige.ch>, Gilbert Ritschard <gilbert.ritschard@unige.ch>
Date of publication2017-03-28 09:11:04
MaintainerMatthias Studer <matthias.studer@unige.ch>
LicenseGPL (>= 2)
Version0.9-2
URL http://mephisto.unige.ch/traminer
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("seqdist2", repos="http://R-Forge.R-project.org")

Man pages

seqcost: Define substitution and indel costs
seqdistOO: Distances (dissimilarities) between sequences

Functions

TraMineR.checkcost Source code
chisqdist Source code
debuglevel Source code
onAttach Source code
seqcost Man page Source code
seqdistOMTrans Source code
seqdistOO Man page Source code
seqsubm Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/TraMineR-checkcost.R
R/chisqdist.R
R/debuglevel.R
R/seqcost.R
R/seqdistOMtrans.R
R/seqdistOO.R
R/zzz.R
man
man/seqcost.Rd
man/seqdistOO.Rd
src
src/DHDdistance.cpp
src/DHDdistance.h
src/LCPdistance.cpp
src/LCPdistance.h
src/Makevars
src/NMSDURSoftdistance.cpp
src/NMSDURSoftdistance.h
src/NMSMSTSoftdistance.cpp
src/NMSMSTSoftdistance.h
src/NMSMSTSoftdistanceII.cpp
src/NMSMSTSoftdistanceII.h
src/NMSMSTdistance.cpp
src/NMSMSTdistance.h
src/NMSdistance.cpp
src/NMSdistance.h
src/OMPerdistance.cpp
src/OMPerdistance.h
src/OMVI2distance.cpp
src/OMVI2distance.h
src/OMVIdistance.cpp
src/OMVIdistance.h
src/OMdistance.cpp
src/OMdistance.h
src/OMvdistance.cpp
src/OMvdistance.h
src/TWEDdistance.cpp
src/TWEDdistance.h
src/TraMineR.h
src/chisq.cpp
src/distancecalculator.cpp
src/distancecalculator.h
src/distancefunctionsOO.cpp
src/distanceobject.cpp
src/distanceobject.h
src/traminerdebug.cpp
seqdist2 documentation built on May 21, 2017, 12:46 a.m.