simecolModels: Model collection for the simecol package

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simecolModels is an open collection of (mostly published) models implemented in the object oriented "simecol" style. The models are intended for reproducing and extending published work and for teaching purposes. The package is growing work in progress which may be eventually splitted in several thematic branches.

Author
Thomas Petzoldt, Karline Soetaert
Date of publication
2013-09-15 20:40:02
Maintainer
Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
License
GPL (>= 2)
Version
0.3-1
URLs

View on R-Forge

Man pages

algaepH
An Algal Model With pH Dynamics
aquaphy
a physiological model of unbalanced algal growth
daphnia_deb
Bioenergetic (Dynamic Energy Budget = DEB) Model of Daphnia
daphnia_deb_ibm
Bioenergetic Individual-Based Model of Daphnia
daphnia_ibm
Simple Individual-Based Model of Daphnia
daphnia_tefi
Daphnia Growth with Temperature and Food Interaction
dvm_phyto
Phytoplankton Growth Model with Pulsed Grazing
mcyst_batch
Microcystin Production Model (Batch Version)
mcyst_batch_mc
Microcystin Production Model (Batch Version for Monte Carlo...
mcyst_chemostat
Microcystin Production Model (Chemostat Version)
NPZD
An NPZD Model
NPZriver
Nutrient Phytoplankton Zooplankton (NPZ) Model in a River
OmexDia
Carbon, Nitrogen and Oxygen Diagenesis in Marine Sediments
OmexDiaDLL
Carbon, Nitrogen and Oxygen Diagenesis in Marine Sediments -...
SiDia
Silicate Diagenesis in Marine Sediments
simecolModels-package
Collection of Model Objects for the simecol-Package
slight
SALMO-Light: an absolutely simplistic lake model
StreamIron
Strontium injection experiment in Uvas Creek, a small stream...
timedepModel-class
Class "timedepModel"
UvasCreek
Strontium injection experiment in Uvas Creek, a small stream...
ZooScheldt
Fate of Marine Zooplankton in the Scheldt Estuary

Files in this package

simecolModels/DESCRIPTION
simecolModels/NAMESPACE
simecolModels/R
simecolModels/R/NPZD.R
simecolModels/R/NPZriver.R
simecolModels/R/OmexDia.R
simecolModels/R/OmexDiaDLL.R
simecolModels/R/SiDia.R
simecolModels/R/StreamIron.R
simecolModels/R/UvasCreek.R
simecolModels/R/ZooScheldt.R
simecolModels/R/aaa_classes.R
simecolModels/R/algaepH.R
simecolModels/R/aquaphy.R
simecolModels/R/daphnia_deb.R
simecolModels/R/daphnia_deb_equations.R
simecolModels/R/daphnia_deb_ibm.R
simecolModels/R/daphnia_deb_lifeequations.R
simecolModels/R/daphnia_deb_phyto.R
simecolModels/R/daphnia_ibm.R
simecolModels/R/daphnia_tefi.R
simecolModels/R/dvmphyto.R
simecolModels/R/mcyst_batch.R
simecolModels/R/mcyst_batch_mc.R
simecolModels/R/mcyst_chemostat.R
simecolModels/R/slight.R
simecolModels/demo
simecolModels/demo/00Index
simecolModels/demo/deb_ibm.R
simecolModels/inst
simecolModels/inst/ToDo.txt
simecolModels/inst/doc
simecolModels/inst/doc/examples
simecolModels/inst/doc/examples/aaa_classes.R
simecolModels/inst/doc/examples/daphnia_deb.R
simecolModels/inst/doc/examples/daphnia_deb_equations.R
simecolModels/inst/doc/examples/daphnia_deb_ibm.R
simecolModels/inst/doc/examples/daphnia_deb_lifeequations.R
simecolModels/inst/doc/examples/daphnia_deb_phyto.R
simecolModels/inst/doc/examples/daphnia_ibm.R
simecolModels/inst/doc/examples/daphnia_tefi.R
simecolModels/inst/doc/examples/dvmphyto.R
simecolModels/inst/doc/examples/iteration.R
simecolModels/inst/doc/examples/mcyst_batch.R
simecolModels/inst/doc/examples/mcyst_batch_mc.R
simecolModels/inst/doc/examples/mcyst_chemostat.R
simecolModels/inst/doc/examples/observer.R
simecolModels/inst/doc/examples/slight.R
simecolModels/man
simecolModels/man/NPZD.Rd
simecolModels/man/NPZriver.Rd
simecolModels/man/OmexDia.Rd
simecolModels/man/OmexDiaDLL.Rd
simecolModels/man/SiDia.Rd
simecolModels/man/StreamIron.Rd
simecolModels/man/UvasCreek.Rd
simecolModels/man/ZooScheldt.Rd
simecolModels/man/algaepH.Rd
simecolModels/man/aquaphy.Rd
simecolModels/man/daphnia_deb.Rd
simecolModels/man/daphnia_deb_ibm.Rd
simecolModels/man/daphnia_ibm.Rd
simecolModels/man/daphnia_tefi.Rd
simecolModels/man/dvm_phyto.Rd
simecolModels/man/mcyst_batch.Rd
simecolModels/man/mcyst_batch_mc.Rd
simecolModels/man/mcyst_chemostat.Rd
simecolModels/man/simecolModels-package.Rd
simecolModels/man/slight.Rd
simecolModels/man/timedepModel-class.Rd
simecolModels/src
simecolModels/src/omexdia.f