soil.spec: Soil Spectroscopy Tools and Reference Models

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Methods and classes for processing and analyzing soil and plant infrared (MIR, alpha-MIR and VISNIR) spectroscopy readings based on the Africa Soil Information Services (AfSIS) project data.

Author
Andrew Sila, Tomislav Hengl and Thomas Terhoeven-Urselmans
Date of publication
2014-12-17 13:31:01
Maintainer
Andrew Sila <a.sila@cgiar.org>
License
GPL (>= 2)
Version
2.1.4
URLs

View on R-Forge

Man pages

afspec
Sample soil spectroscopy data from Africa Sentinel Sites
afss
Africa Sentinel Site data (wet chemistry)
fit.SpectraModel
Fits a calibration model for soil spectroscopy
ken.sto
Sample selection based on the Kennard-Stone algorithm
plot.Spectra
Plots spectral signatures
predict.SpectraPoints
Predict soil properties from an object of class...
read.opus
Reads binary OPUS files containing spectroscopy
read.spc
Reads spectral spc-files into R
spec.env
Soil.spec package specific environmental variables
spectra.outliers
A tool for screening spectral outliers based on...
SpectraPoints
A class for spectral absorbance measurements
trans
Spectral transformation
wavenumbers
Standard bands

Files in this package

soil.spec/DESCRIPTION
soil.spec/NAMESPACE
soil.spec/R
soil.spec/R/AAA-classes.R
soil.spec/R/ZZZ.R
soil.spec/R/fit.SpectraModel.R
soil.spec/R/ken.sto.R
soil.spec/R/plot.spectra.R
soil.spec/R/plot.trans.R
soil.spec/R/predict.SpectraPoints.R
soil.spec/R/read.opus.R
soil.spec/R/read.spc.R
soil.spec/R/reshape.R
soil.spec/R/spec.env.R
soil.spec/R/spectra.R
soil.spec/R/spectra.outliers.R
soil.spec/R/trans.R
soil.spec/R/validate.R
soil.spec/data
soil.spec/data/afspec.rda
soil.spec/data/afss.rda
soil.spec/data/datalist
soil.spec/data/m.ALUM3S.rda
soil.spec/data/m.ECAM3S.rda
soil.spec/data/m.EMGM3S.rda
soil.spec/data/m.ENAM3S.rda
soil.spec/data/m.EXB.rda
soil.spec/data/m.EXKM3S.rda
soil.spec/data/m.NITCNS.rda
soil.spec/data/m.ORCCNS.rda
soil.spec/data/m.PHIHOX.rda
soil.spec/data/m.SNDLDF.rda
soil.spec/data/wavenumbers.rda
soil.spec/inst
soil.spec/inst/icr_087266_B2.0
soil.spec/inst/icr_087273_G3.0
soil.spec/inst/icr_087273_H3.0
soil.spec/man
soil.spec/man/SpectraPoints.Rd
soil.spec/man/afspec.Rd
soil.spec/man/afss.Rd
soil.spec/man/fit.SpectraModel.Rd
soil.spec/man/ken.sto.Rd
soil.spec/man/plot.Spectra.Rd
soil.spec/man/predict.SpectraPoints.Rd
soil.spec/man/read.opus.Rd
soil.spec/man/read.spc.Rd
soil.spec/man/spec.env.Rd
soil.spec/man/spectra.outliers.Rd
soil.spec/man/trans.Rd
soil.spec/man/wavenumbers.Rd