plot-methods: Methods for Function 'plot' in Package 'ssExtra'

In ssExtra: Additional routines for sampSurf

Description

These are simple methods to plot objects found in this package; e.g., “ssBigBAF” objects, which have slots that are sampling surfaces. Many more methods are documented for the full sampSurf package in plot.

Methods

signature(x = "ssBigBAF", y = "missing")

This will plot one or more sampling surfaces contained in an ssBigBAF object. Optionally, it can plot a set of sampled points as an overlay.

usage...

plot(x, 
     whichSS = slotNames(x)[grep('ss.', slotNames(x))],
     sampleCells = NULL,
     titles = NULL,
     namesAsTitles = TRUE,
     ... )

• x: An object that is a subclass of “ssBigBAF”.

• whichSS: The slot name(s) of the sampling surfaces to plot. See ssBigBAF for the slot names.

• sampleCells: A vector of cell numbers (sample points) to highlight, or NULL for no points. See showCells for more information.

• titles: A vector (of length(whichSS)) of titles that will be shown on the individual sampling surface subplots; or NULL for no titles, conditional on namesAsTitles.

• namesAsTitles: If titles is NULL or not the correct length, then this kicks in as; TRUE: use the slot names as titles (default); FALSE: no titles will be plotted.

• ... : Other graphics arguments to be passed on to the plot method for “sampSurf” objects.

ssExtra documentation built on May 27, 2020, 3 p.m.