superbiclust: Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)

Biclusters are submatrices in the data matrix which satisfy certain conditions of homogeneity. Package contains functions for generating robust biclusters with respect to the initialization parameters for a given bicluster solution contained in a bicluster set in data, the procedure is also known as ensemble biclustering. The set of biclusters is evaluated based on the similarity of its elements (the overlap), and afterwards the hierarchical tree is constructed to obtain cut-off points for the classes of robust biclusters. The result is a number of robust (or super) biclusters with none or low overlap.

AuthorTatsiana Khamiakova
Date of publication2014-11-27 15:39:29
MaintainerTatsiana Khamiakova <tatsiana.khamiakova@uhasselt.be>
LicenseGPL (>= 2)
Version1.1

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Functions

BiclustSet Man page
BiclustSet,ANY-method Man page
BiclustSet,Biclust-method Man page
BiclustSet-class Man page
BiclustSet,Factorization-method Man page
BiclustSet,list-method Man page
BiclustSet-methods Man page
combine Man page
getStats Man page
HCLtree Man page
jaccardMat Man page
kulczynskiMat Man page
ochiaiMat Man page
plotProfilesAcrossAllSamples Man page
plotProfilesWithinBicluster Man page
plotSuper Man page
plotSuperAll Man page
sensitivityMat Man page
show,BiclustSet-method Man page
similarity Man page
sorensenMat Man page
specificityMat Man page
summary,BiclustSet-method Man page
superbiclust Man page
superbiclust-package Man page

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