summary.LDdf: Summary for LD objects

In synbreed: Framework for the Analysis of Genomic Prediction Data using R

Description

Summary method for class ”LDdf” and ”LDmat”

Usage

## S3 method for class 'LDdf'
summary(object, cores = 1, ...)

Arguments

object	object of class LDdf or LDmat which is the output of function pairwiseLD and argument type="data.frame" or type="matrix"
cores	numeric. Specifies the number of cores for parallel computing.
...	not used

Details

Returns for each chromosome: Number of markers; mean, minimum and maximum LD measured as r2; fraction of markers with r2>0.2; average and maximum distance of number of markers

Author(s)

Valentin Wimmer and Hans-Juergen Auinger

See Also

pairwiseLD, ~~~

Examples

## Not run: 
library(synbreed)
data(maize)
maizeC <- codeGeno(maize)
maizeLD <- pairwiseLD(maizeC, chr = 1:10, type = "data.frame")
maizeLDm <- pairwiseLD(maizeC, chr = 1:10, type = "matrix")
summary(maizeLD)
summary(maizeLDm)

## End(Not run)

synbreed documentation built on March 12, 2021, 3:01 a.m.