R/tour-grand.r

#' A grand tour path.
#'
#' This method generates target bases by randomly sampling on
#' the space of all d-dimensional planes in p-space.
#'
#' Usually, you will not call this function directly, but will pass it to 
#' a method that works with tour paths like \code{\link{animate}}, 
#' \code{\link{save_history}} or \code{\link{render}}.
#' 
#' @param d target dimensionality
#' @examples
#' # All animation methods use the grand tour path by default
#' animate_dist(flea[, 1:6])
#' animate_xy(flea[, 1:6])
#' animate_pcp(flea[, 1:6])
#' animate_pcp(flea[, 1:6], grand_tour(4))
#'
#' # The grand tour is a function:
#' tour2d <- grand_tour(2)
#' is.function(tour2d)
#' 
#' # with two parameters, the previous projection and the data set
#' args(tour2d)
#' # if the previous projection is null, it will generate a starting
#' # basis, otherwise the argument is ignored
#' tour2d(NULL, mtcars)
#' # the data argument is just used to determine the correct dimensionality
#' # of the output matrix
#' tour2d(NULL, mtcars[, 1:2])
grand_tour <- function(d = 2) {
  generator <- function(current, data) {
    if (is.null(current)) return(basis_init(ncol(data), d))

    basis_random(ncol(data), d)      
  }

  new_geodesic_path("grand", generator) 
}

#' Generate a random basis
#'
#' @keywords internal
#' @param n dimensionality of data
#' @param d dimensionality of target projection
basis_random <- function(n, d = 2) {  
  mvn <- matrix(rnorm(n * d), ncol = d)
  orthonormalise(mvn)
}

#' Generate initial basis.
#'
#' First two variables are projected on first two axes.
#'
#' @keywords internal
#' @param n dimensionality of data
#' @param d dimensionality of target projection
basis_init <- function(n, d) {
  start <- matrix(0, nrow = n, ncol = d)
  diag(start) <- 1    
  start
}

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tourr documentation built on May 2, 2019, 5:28 p.m.