API for ACME
Algorithms for Calculating Microarray Enrichment (ACME)
| Global functions | |
|---|---|
| .plotACMECalcSet | Source code |
| .plotACMESet | Source code |
| ACMECalcSet-class | Man page |
| ACMESet-class | Man page |
| aGFF-class | Man page |
| aGFFCalc-class | Man page |
| chromosome | Man page |
| chromosome,ACMESet-method | Man page |
| cutpoints | Man page |
| cutpoints,ACMECalcSet-method | Man page |
| do.aGFF.calc | Man page |
| end | Man page |
| end,ACMESet-method | Man page |
| example.agff | Man page |
| findClosestGene | Man page |
| findRegions | Man page |
| getRefflat | Man page |
| plot | Man page |
| plot,ACMECalcSet-method | Man page |
| plot,ACMESet-method | Man page |
| plot,aGFF-method | Man page |
| plot,aGFFCalc-method | Man page |
| plotgff | Source code |
| plotgffcalc | Source code |
| print,aGFF-method | Man page |
| print,aGFFCalc-method | Man page |
| printgff | Source code |
| printgffcalc | Source code |
| read.resultsGFF | Man page |
| show,ACMECalcSet-method | Man page |
| show,aGFF-method | Man page |
| show,aGFFCalc-method | Man page |
| start | Man page |
| start,ACMESet-method | Man page |
| threshold | Man page |
| threshold,ACMECalcSet-method | Man page |
| vals | Man page |
| vals,ACMECalcSet-method | Man page |
| windowChisq | Source code |
| write.bedGraph | Man page |
| write.sgr | Man page Source code |
