getRefflat: Get the refflat table from ucsc for the given genome
In ACME: Algorithms for Calculating Microarray Enrichment (ACME)
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
Fetches the refflat table from ucsc, stores in temp dir and then
gunzips it and reads it in.
Usage
1
getRefflat(genome = "hg17")
Arguments
genome
The genome code from ucsc, like 'hg16', 'mm6', etc.
Value
A data frame mirroring the UCSC table structure.
Author(s)
Sean Davis <sdavis2@mail.nih.gov>
References
http://genome.ucsc.edu
See Also
Examples
1
rf <- getRefflat('hg17')
ACME documentation built on Nov. 8, 2020, 7:51 p.m.
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Description Usage Arguments Value Author(s) References See Also Examples
Description
Fetches the refflat table from ucsc, stores in temp dir and then gunzips it and reads it in.
Usage
1 | getRefflat(genome = "hg17")
|
Arguments
genome |
The genome code from ucsc, like 'hg16', 'mm6', etc. |
Value
A data frame mirroring the UCSC table structure.
Author(s)
Sean Davis <sdavis2@mail.nih.gov>
References
http://genome.ucsc.edu
See Also
Examples
1 | rf <- getRefflat('hg17')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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