write.bedGraph: Write bedGraph format tracks for UCSC genome browser

Description Usage Arguments Author(s) Examples

Description

Generate bedGraph format files for the UCSC genome browser. This function will write the bedGraph files associated with a aGFFcalc object. There will be either one or two files (default two) representing the raw data and the calculated data (which is output as -log10(val) for visualization purposes for EACH sample).

Usage

1
write.bedGraph(x, raw = TRUE, vals = TRUE, directory = ".")

Arguments

x

An ACMESet or ACMECalcSet object

raw

Boolean. Create a file for the raw data?

vals

Boolean. Create a file for the calculated p-values?

directory

Give a directory for storing the files

Author(s)

Sean Davis

Examples

1
2


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