Man pages for ACME
Algorithms for Calculating Microarray Enrichment (ACME)
| ACMECalcSet-class | Class "ACMECalcSet" |
| ACMESet-class | Class "ACMESet" |
| aGFFCalc-class | Class "aGFFCalc" |
| aGFF-class | Class for storing GFF-like data |
| do.aGFF.calc | Perform ACME calculation |
| example.agff | An example ACME data structure of class ACMESet |
| findClosestGene | Find closest refseq gene |
| findRegions | Find all regions in data above p-value threshold |
| generics | Generics defined within ACME |
| getRefflat | Get the refflat table from ucsc for the given genome |
| read.resultsGFF | Read Nimblegen GFF files |
| write.bedGraph | Write bedGraph format tracks for UCSC genome browser |
| write.sgr | Write Affy IGB .sgr format files |
