drawStat: draw P-values and enrichment scores for all lysine sites on a...
In ASEB: Predict Acetylated Lysine Sites

Description Usage Arguments Details See Also Examples

This function is used to show P-values and enrichment scores for all lysine sites on a specific protein.

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drawStat(curveInfoDataFrame, proteinIds=NULL, outputDir=NULL, figKind=c("pdf","jpeg"))
## S4 method for signature 'data.frame'
drawStat(curveInfoDataFrame, proteinIds=NULL, outputDir=NULL, figKind=c("pdf","jpeg"))

`curveInfoDataFrame`	data.frame object: contains curve information for all proteins, see example.
`proteinIds`	character vector: only draw curves for proteins with ids appear in this vector. default: draw curves for all the proteins appear in curveInfoDataFrame.
`outputDir`	character(1), output directory name for all the figures.
`figKind`	character(1), fig format: `"pdf"` or `"jpeg"`.

This function is used to draw P-values and enrichment scores for all lysine sites on a specific protein. The X-axis shows positions of all lysine sites on a specific protein, and Y-axis shows the enrichment scores (0~1) and P-values (0~1) for each lysine site. The data.frame object contains curve information is given by asebProteins.

SequenceInfo, readSequence, asebSites, asebProteins, drawEScurve.

    backgroundSites <- readSequence(system.file("extdata", "background_sites.fa", package="ASEB")) 
    prodefinedSites <- readSequence(system.file("extdata", "predefined_sites.fa", package="ASEB"))
    testProteins <- readSequence(system.file("extdata", "proteins_to_test.fa", package="ASEB"))
    resultList <- asebProteins(backgroundSites, prodefinedSites, testProteins, permutationTimes=100)
    #drawEScurve(resultList$curveInfo, max_p_value=0.5, min_es=0, outputDir=tempdir(), figKind="jpeg")
    drawStat(resultList$curveInfo, outputDir=tempdir(), figKind="jpeg");
    cat("see figures in output dir:", tempdir(),"\n")