GSE114922.psi: Example dataset containing PSI values
In ASpediaFI: ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
Description
Usage
Format
References
Examples
Description
A SummarizedExperiment containing PSI values of 5,000 AS events.
We downloaded
RNA-Seq reads of 82 MDS patients from GEO database (GSE114922),
aligned with STAR, and computed PSI values using rMATS. AS events with a lot
of missing values or extreme values, or those on genes with low expression
were filtered out and 5,000 most variable AS events were selected.
Usage
1
Format
An object of class SummarizedExperiment with 10000 rows and 40 columns.
References
Pellagatti, A. et al. (2018). Impact of spliceosome mutations on
RNA splicing in myelodysplasia: dysregulated genes/pathways and clinical
associations. Blood, 132.
Examples
1
ASpediaFI documentation built on Nov. 8, 2020, 8:13 p.m.
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Description Usage Format References Examples
Description
A SummarizedExperiment containing PSI values of 5,000 AS events. We downloaded RNA-Seq reads of 82 MDS patients from GEO database (GSE114922), aligned with STAR, and computed PSI values using rMATS. AS events with a lot of missing values or extreme values, or those on genes with low expression were filtered out and 5,000 most variable AS events were selected.
Usage
1 |
Format
An object of class SummarizedExperiment with 10000 rows and 40 columns.
References
Pellagatti, A. et al. (2018). Impact of spliceosome mutations on RNA splicing in myelodysplasia: dysregulated genes/pathways and clinical associations. Blood, 132.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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