chisq.test: chi-square test

In AllelicImbalance: Investigates Allele Specific Expression

Description

Performs a chisq.test on an ASEset object.

Usage

## S4 method for signature 'ASEset'
chisq.test(x, y = "*")

Arguments

x	ASEset object
y	strand option

Details

The test is performed on one strand in an ASEset object.

Value

chisq.test returns a matrix with the chisq.test P-value for each SNP and sample

Author(s)

Jesper R. Gadin, Lasse Folkersen

See Also

• The binom.test which is another test that can be applied on an ASEset object.

Examples

#load example data
data(ASEset)

#make a chi-square test on default non-stranded strand 
chisq.test(ASEset)

AllelicImbalance documentation built on Nov. 8, 2020, 6:52 p.m.