decorateWithGenes: decorateWithGenes

In AllelicImbalance: Investigates Allele Specific Expression

Description

Internal function that can draw gene regions on pre-specified surfaces. Necessary for the genomic-location plots.

Usage

decorateWithGenes(x, genesInRegion, xlim, ylim, chromosome)

Arguments

x	ASEset object
genesInRegion	GRanges object with gene regions. Can be obtained using getGenesFromAnnotation
xlim	xlim values for the pre-specified surface
ylim	ylim values for the pre-specified surface
chromosome	character

Details

The main intention of this function is to be used when plotting several bar plots in the same window. This function add gene regions under the bars.

Value

decorateWithGenes returns nothing, but draws genes

Author(s)

Jesper R. Gadin, Lasse Folkersen

See Also

• The locationplot which is uses this function internally.

• The decorateWithExons which is another similar function that locationplot uses internally.

Examples

  data(ASEset)

AllelicImbalance documentation built on Nov. 8, 2020, 6:52 p.m.