file_lister: NMR file lister

In AlpsNMR: Automated spectraL Processing System for NMR

Description

The function lists samples from the chosen folder required to import and create a nmr_dataset_1D object. The function is based on the fs::dir_ls() function.

Usage

file_lister(dataset_path_nmr, glob)

Arguments

dataset_path_nmr	A character vector of the path where samples are.
glob	A wildcard or globbing pattern common for the samples to be read, for example ending with *0 (spectra acquired by a NOESY sequence often end by 0: 10, 20, 30...) or *s (for example, samples from the tutorial in this package) passed on to grep() to filter paths.

Value

lists of samples from the chosen folder

See Also

Other nmr_dataset_1D functions: [.nmr_dataset_1D(), computes_peak_width_ppm(), files_to_rDolphin(), format.nmr_dataset_1D(), is.nmr_dataset_1D(), load_and_save_functions, new_nmr_dataset_1D(), nmr_align_find_ref(), nmr_baseline_removal(), nmr_baseline_threshold(), nmr_exclude_region(), nmr_integrate_regions(), nmr_interpolate_1D(), nmr_meta_add(), nmr_meta_export(), nmr_meta_get_column(), nmr_meta_get(), nmr_normalize(), nmr_pca_build_model(), nmr_pca_outliers_filter(), nmr_pca_outliers_plot(), nmr_pca_outliers_robust(), nmr_pca_outliers(), nmr_ppm_resolution(), plot.nmr_dataset_1D(), plot_webgl(), print.nmr_dataset_1D(), rdCV_PLS_RF_ML(), rdCV_PLS_RF(), save_files_to_rDolphin(), to_ChemoSpec(), validate_nmr_dataset_peak_table(), validate_nmr_dataset()

Examples

dir_to_demo_dataset <- system.file("dataset-demo", package = "AlpsNMR")
lists_of_samples <- file_lister(dir_to_demo_dataset, "*0")

AlpsNMR documentation built on April 1, 2021, 6:02 p.m.