BANDITS-package: BANDITS: Bayesian ANalysis of DIfferenTial Splicing
In BANDITS: BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Description
BANDITS is a Bayesian hierarchical model for detecting differential splicing of genes and transcripts,
via differential transcript usage (DTU), between two or more conditions.
The method uses a Bayesian hierarchical framework, which allows for sample specific proportions
in a Dirichlet-Multinomial model, and samples the allocation of fragments to the transcripts.
Parameters are inferred via Markov chain Monte Carlo (MCMC) techniques and a DTU test is performed
via a multivariate Wald test on the posterior densities for the average relative abundance of transcripts.
Questions relative to BANDITS should be either written to the Bioconductor support site, tagging the question with 'BANDITS', or reported as a new issue at BugReports.
To access the vignettes, type: browseVignettes("BANDITS").
Author(s)
Simone Tiberi [aut, cre], Mark D. Robinson [aut].
Maintainer: Simone Tiberi <simone.tiberi@uzh.ch>
BANDITS documentation built on Nov. 8, 2020, 5:30 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
BANDITS is a Bayesian hierarchical model for detecting differential splicing of genes and transcripts, via differential transcript usage (DTU), between two or more conditions. The method uses a Bayesian hierarchical framework, which allows for sample specific proportions in a Dirichlet-Multinomial model, and samples the allocation of fragments to the transcripts. Parameters are inferred via Markov chain Monte Carlo (MCMC) techniques and a DTU test is performed via a multivariate Wald test on the posterior densities for the average relative abundance of transcripts.
Questions relative to BANDITS should be either written to the Bioconductor support site, tagging the question with 'BANDITS', or reported as a new issue at BugReports.
To access the vignettes, type: browseVignettes("BANDITS").
Author(s)
Simone Tiberi [aut, cre], Mark D. Robinson [aut].
Maintainer: Simone Tiberi <simone.tiberi@uzh.ch>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.