Files in BANDITS

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

build/partial.rdb

src/Rcpp_Unique_MultiGroup.cpp

src/Makevars.win

src/RcppExports.cpp

src/Makevars

src/Rcpp_Unique.cpp

src/Rcpp_Together.cpp

src/Rcpp_Together_MultiGroup.cpp

data/results.RData

data/gene_tr_id.RData

data/precision.RData

data/input_data.RData

R/MCMC_functions.R R/data_precision.R R/data_input_data.R R/run_Multigroup.R R/MCMC_Unique_MultiGroup.R R/infer_only_Together.R R/MCMC_Together_MultiGroup.R R/MCMC_Together.R R/RcppExports.R R/data_results.R R/roxygen_tags.R R/MCMC_Unique.R R/eff_len_compute.R R/filter_Genes.R R/Class_BANDITS_test.R R/load_salmon_data.R R/create_data.R R/run_OneGroup.R R/run.R R/data_gene_tr_id.R R/filter_transcripts.R R/prior_precision.R R/Class_BANDITS_data.R R/infer_only.R R/load_kallisto_data.R

vignettes/References.bib

vignettes/BANDITS.Rmd man/eff_len_compute.Rd man/BANDITS_test-class.Rd man/gene_tr_id.Rd man/BANDITS-package.Rd man/input_data.Rd man/results.Rd man/precision.Rd man/filter_transcripts.Rd man/create_data.Rd man/BANDITS_data-class.Rd man/prior_precision.Rd man/test_DTU.Rd man/filter_genes.Rd man/plot_precision.Rd tests/testthat.R tests/testthat/test_eff_len_compute.R tests/testthat/test_filter_genes.R tests/testthat/test_prior_precision.R tests/testthat/test_test_DTU.R tests/testthat/test_create_data.R tests/testthat/test_filter_transcripts.R

inst/CITATION

inst/doc/BANDITS.html

inst/doc/BANDITS.R inst/doc/BANDITS.Rmd

inst/extdata/BANDITS.png

inst/extdata/Homo_sapiens.GRCh38.cdna.all.1.1.10M.fa.gz

inst/extdata/STAR-salmon/sample1/quant.sf

inst/extdata/STAR-salmon/sample1/aux_info/eq_classes.txt

inst/extdata/STAR-salmon/sample3/quant.sf

inst/extdata/STAR-salmon/sample3/aux_info/eq_classes.txt

inst/extdata/STAR-salmon/sample4/quant.sf

inst/extdata/STAR-salmon/sample4/aux_info/eq_classes.txt

inst/extdata/STAR-salmon/sample2/quant.sf

inst/extdata/STAR-salmon/sample2/aux_info/eq_classes.txt

inst/extdata/kallisto/sample1/pseudoalignments.ec

inst/extdata/kallisto/sample1/pseudoalignments.tsv

inst/extdata/kallisto/sample3/pseudoalignments.ec

inst/extdata/kallisto/sample3/pseudoalignments.tsv

inst/extdata/kallisto/sample4/pseudoalignments.ec

inst/extdata/kallisto/sample4/pseudoalignments.tsv

inst/extdata/kallisto/sample2/pseudoalignments.ec

inst/extdata/kallisto/sample2/pseudoalignments.tsv

inst/script/extdata.Rmd

BANDITS documentation built on Nov. 8, 2020, 5:30 p.m.