API for BCRANK
Predicting binding site consensus from ranked DNA sequences
| Global functions | |
|---|---|
| .onLoad | Source code |
| BCRANKmatch | Man page Source code |
| BCRANKmatch-class | Man page |
| BCRANKout | Man page |
| BCRANKresult | Man page Source code |
| BCRANKresult-class | Man page |
| BCRANKsearch | Man page Source code |
| BCRANKsearch-class | Man page |
| addNs | Source code |
| bcrank | Man page Source code |
| bcrankRun | Source code |
| bcrankScore | Man page |
| bcrankScore,BCRANKmatch-method | Man page |
| consensus | Man page |
| consensus,BCRANKmatch-method | Man page |
| createPWM | Source code |
| fname | Man page |
| fname,BCRANKresult-method | Man page |
| getBCRANKNeighbours | Source code |
| getBCRANKScore | Source code |
| hitsForNeighboursInC | Source code |
| iupacToCons | Source code |
| matchConsensus | Source code |
| matchVector | Man page |
| matchVector,BCRANKmatch-method | Man page |
| matchingSites | Man page Source code |
| plot,BCRANKsearch,missing-method | Man page |
| pwm | Man page |
| pwm,BCRANKsearch-method | Man page |
| revComp | Source code |
| searchPath | Man page |
| searchPath,BCRANKsearch-method | Man page |
| seqFromFile | Source code |
| show,BCRANKmatch-method | Man page |
| show,BCRANKresult-method | Man page |
| show,BCRANKsearch-method | Man page |
| toptable | Man page |
| toptable,BCRANKresult-method | Man page |
| trimNs | Source code |
| trimWhiteSpace | Source code |
