API for BEARscc
BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)
| Global functions | |
|---|---|
| . | Man page |
| .Random.seed | Man page |
| BEAR_analyzed.sce | Man page |
| BEAR_examples.sce | Man page |
| BEARscc | Man page |
| BEARscc-package | Man page |
| BEARscc_clusts.df | Man page |
| BEARscc_examples | Man page |
| ERCC.counts.df | Man page |
| ERCC.meta.df | Man page |
| HPC_simulate_replicates | Man page Source code |
| L1 | Man page |
| Overall.mean | Man page |
| V1 | Man page |
| analysis_examples | Man page |
| apply_bayes | Man page Source code |
| build_dropoutmodel | Man page Source code |
| calculate_cell_metrics | Man page |
| calculate_cell_metrics_by_cluster | Man page Source code |
| calculate_cluster_metrics | Man page Source code |
| calculate_cluster_metrics_by_cluster | Man page Source code |
| cleanup_model_names | Man page Source code |
| cluster_consensus | Man page |
| clusters.df | Man page |
| compute_alpha | Man page Source code |
| compute_consensus | Man page |
| compute_genewise_dropouts | Man page Source code |
| counts2mpc | Man page Source code |
| create_cm | Man page Source code |
| create_null_dropout_model | Man page Source code |
| data.counts.df | Man page |
| estimate_missingdata | Man page Source code |
| estimate_mu2sigma | Man page Source code |
| estimate_noiseparameters | Man page Source code |
| estimate_undetected2molpercell | Man page Source code |
| example_code | Man page |
| execute_noiseinjected_counts | Man page |
| execute_sim_replicates | Man page Source code |
| fill_out_count_probability_table | Man page Source code |
| gene_name | Man page |
| genewise_dropouts | Man page Source code |
| iterate_alphas | Man page Source code |
| iterate_spikeins | Man page Source code |
| mean.prom | Man page |
| melt_spikeins | Man page Source code |
| noise_consensus | Man page |
| permute_count_in_dropout_range | Man page Source code |
| plot_alpha2mu | Man page Source code |
| plot_cluster_metrics | Man page |
| plot_mu2sigma | Man page Source code |
| plot_obs2actual | Man page Source code |
| plot_spikein_fits | Man page Source code |
| prepare_data | Man page Source code |
| randomizer | Man page Source code |
| recluster | Man page |
| report_cell_metrics | Man page |
| report_cluster_metrics | Man page |
| rn | Man page |
| sample_models | Man page Source code |
| simulate_replicates | Man page Source code |
| size | Man page |
| subcompute_sample_models | Man page Source code |
| subplot_spikein_fits | Man page Source code |
| transcripts | Man page |
| value | Man page |
| write_noise_model | Man page Source code |
