API for BEARscc
BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)

Global functions
. Man page
.Random.seed Man page
BEAR_analyzed.sce Man page
BEAR_examples.sce Man page
BEARscc Man page
BEARscc-package Man page
BEARscc_clusts.df Man page
BEARscc_examples Man page
ERCC.counts.df Man page
ERCC.meta.df Man page
HPC_simulate_replicates Man page Source code
L1 Man page
Overall.mean Man page
V1 Man page
analysis_examples Man page
apply_bayes Man page Source code
build_dropoutmodel Man page Source code
calculate_cell_metrics Man page
calculate_cell_metrics_by_cluster Man page Source code
calculate_cluster_metrics Man page Source code
calculate_cluster_metrics_by_cluster Man page Source code
cleanup_model_names Man page Source code
cluster_consensus Man page
clusters.df Man page
compute_alpha Man page Source code
compute_consensus Man page
compute_genewise_dropouts Man page Source code
counts2mpc Man page Source code
create_cm Man page Source code
create_null_dropout_model Man page Source code
data.counts.df Man page
estimate_missingdata Man page Source code
estimate_mu2sigma Man page Source code
estimate_noiseparameters Man page Source code
estimate_undetected2molpercell Man page Source code
example_code Man page
execute_noiseinjected_counts Man page
execute_sim_replicates Man page Source code
fill_out_count_probability_table Man page Source code
gene_name Man page
genewise_dropouts Man page Source code
iterate_alphas Man page Source code
iterate_spikeins Man page Source code
mean.prom Man page
melt_spikeins Man page Source code
noise_consensus Man page
permute_count_in_dropout_range Man page Source code
plot_alpha2mu Man page Source code
plot_cluster_metrics Man page
plot_mu2sigma Man page Source code
plot_obs2actual Man page Source code
plot_spikein_fits Man page Source code
prepare_data Man page Source code
randomizer Man page Source code
recluster Man page
report_cell_metrics Man page
report_cluster_metrics Man page
rn Man page
sample_models Man page Source code
simulate_replicates Man page Source code
size Man page
subcompute_sample_models Man page Source code
subplot_spikein_fits Man page Source code
transcripts Man page
value Man page
write_noise_model Man page Source code
BEARscc documentation built on Oct. 31, 2019, 3:35 a.m.