BEARscc_examples: Example data for BEARscc.

Description Usage Format Value Source References Examples

Description

A toy dataset for applying BEARscc functions as described in the README on https://bitbucket.org/bsblabludwig/bearscc.git and vignette accompanying this package on Bioconductor.

Usage

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data("BEARscc_examples")

Format

And R data file with:

df "data.counts.df" Toy dataframe of endogenous counts with 117 genes and 50 samples.
df "ERCC.counts.df" Toy dataframe of ERCC counts with 57 spike-ins and 50 samples.
df "ERCC.meta.df" Toy dataframe of spike-in concentration values and spike-in labels as row names.
[,1] Spike-in actual concentration.
SCEList "BEAR_examples.sce" A SingleCellExpression object described in more detail in the accompanying vignette.

Value

An R data file containing three data.frame objects and a single SingleCellExpression object for the purpose of tutorials, testing, and help file examples.

Source

These data are a subset of observations Drs. Michael White and Richard Owen in the Xin Lu Lab. Samples were sequenced by the Wellcome Trust Center for Genomics, Oxford, UK. These data are available in full with GEO accession number, GSE95155.

References

Source code and README: <https://bitbucket.org/bsblabludwig/bearscc/overview> Associated preprint: <https://www.biorxiv.org/content/early/2017/06/05/118919>

Examples

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BEARscc documentation built on Nov. 8, 2020, 7:56 p.m.