Files in BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs

TODO

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

R/export-methods.R R/extractAt-methods.R R/ODLT_SNPlocs-class.R R/BSgenome-class.R R/BSgenomeViews-class.R R/utils.R R/XtraSNPlocs-class.R R/SNPlocs-class.R R/injectSNPs.R R/available.genomes.R R/OnDiskLongTable-class.R R/InjectSNPsHandler-class.R R/BSgenome-utils.R R/OldFashionSNPlocs-class.R R/bsapply.R R/BSgenomeForge.R R/getSeq-methods.R R/OnDiskLongTable_old-class.R R/OnDiskNamedSequences-class.R

vignettes/GenomeSearching.Rnw

vignettes/BSgenomeForge.Rnw

man/BSgenomeViews-class.Rd man/export-methods.Rd man/XtraSNPlocs-class.Rd man/BSgenomeForge.Rd man/available.genomes.Rd man/BSParams-class.Rd man/BSgenome-utils.Rd man/SNPlocs-class.Rd man/injectSNPs.Rd man/BSgenome-class.Rd man/bsapply.Rd man/getSeq-methods.Rd inst/doc/GenomeSearching.R

inst/doc/GenomeSearching.Rnw

inst/doc/BSgenomeForge.pdf inst/doc/GenomeSearching.pdf inst/doc/BSgenomeForge.R

inst/doc/BSgenomeForge.Rnw

inst/extdata/ce2dict0.fa

inst/extdata/ce2chrM.fa.gz

inst/extdata/ce2chrX.fa.gz

inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-seed

inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-seed

inst/extdata/GentlemanLab/BSgenome.Ppaniscus.UCSC.panPan1-seed

inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5.masked-seed

inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1-seed

inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2.masked-seed

inst/extdata/GentlemanLab/bump_seed_version.sh

inst/extdata/GentlemanLab/BSgenome.influenza.NCBI.20100628-seed

inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17.masked-seed

inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1-seed

inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17-seed

inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-seed

inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3.masked-seed

inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9-seed

inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38-seed

inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-seed

inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6.masked-seed

inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3.masked-seed

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6.masked-seed

inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-seed

inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18-seed

inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-seed

inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2-seed

inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2-seed

inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm6-seed

inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1.masked-seed

inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3.masked-seed

inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18.masked-seed

inst/extdata/GentlemanLab/ForgeAll.R

inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce10-seed

inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4-seed

inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10-seed

inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-seed

inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3.masked-seed

inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-seed

inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-seed

inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer2-seed

inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9.masked-seed

inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce2-seed

inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-seed

inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce11-seed

inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3-seed

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-seed

inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer1-seed

inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38.masked-seed

inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3.masked-seed

inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-seed

inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4-seed

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-seed

inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-seed

inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3-seed

inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-seed

inst/extdata/GentlemanLab/BSgenome.Ecoli.NCBI.20080805-seed

inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4.masked-seed

inst/extdata/GentlemanLab/BSgenome.Dvirilis.Ensembl.dvircaf1-seed

inst/extdata/GentlemanLab/BSgenome.Mfuro.UCSC.musFur1-seed

inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn6-seed

inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce6-seed

inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3.masked-seed

inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-seed

inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10.masked-seed

inst/extdata/GentlemanLab/BSgenome.Ppaniscus.UCSC.panPan2-seed

inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2-seed

inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-seed

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7.masked-seed

inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-seed

inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2.masked-seed

inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-seed

inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2-seed

inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.04232008-seed

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-seed

inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3-seed

inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8.masked-seed

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5.masked-seed

inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-seed

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-seed

inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8-seed

inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4.masked-seed

inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-seed

inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1.masked-seed

inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19.masked-seed

inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-seed

inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-seed

inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-seed

inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2.masked-seed

inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19-seed

inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-seed

inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-seed

inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4.masked-seed

inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2.masked-seed

inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2.masked-seed

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-seed

inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer3-seed

inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2-seed

inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau8-seed

inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3.masked-seed

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/NOTES.TXT

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/splitbigfasta.R inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/splitbigfasta.R

inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/NOTES.TXT

inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-tools/sort_susScr11.2bit.R inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/splitbigfasta.R inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools/sort_taeGut2.2bit.R

inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh

inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/NOTES.TXT

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/NOTES.TXT

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/splitbigfasta.R inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/fasta_to_sorted2bit.R inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/fasta_to_sorted_2bit.R inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-tools/sort_calJac3.2bit.R inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-tools/sort_rheMac10.2bit.R

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh

inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/NOTES.TXT

inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools/sort_galGal5.2bit.R inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-tools/sort_danRer11.2bit.R inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools/sort_rheMac8.2bit.R inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/splitbigfasta.R inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-tools/sort_bosTau9.2bit.R

inst/pkgtemplates/BSgenome_datapkg/NAMESPACE

inst/pkgtemplates/BSgenome_datapkg/DESCRIPTION

inst/pkgtemplates/BSgenome_datapkg/R/zzz.R

inst/pkgtemplates/BSgenome_datapkg/man/package.Rd

inst/pkgtemplates/MaskedBSgenome_datapkg/NAMESPACE

inst/pkgtemplates/MaskedBSgenome_datapkg/DESCRIPTION

inst/pkgtemplates/MaskedBSgenome_datapkg/R/zzz.R

inst/pkgtemplates/MaskedBSgenome_datapkg/man/package.Rd

BSgenome documentation built on Nov. 8, 2020, 7:48 p.m.

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Note that we can't provide technical support on individual packages. You should contact the package authors for that.

BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs

Files in BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs

R Package Documentation

Browse R Packages

We want your feedback!

BSgenome Software infrastructure for efficient representation of full genomes and their SNPs

Files in BSgenome Software infrastructure for efficient representation of full genomes and their SNPs

R Package Documentation

Browse R Packages

We want your feedback!

BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs

Files in BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs