check_genome: Check for chromosomes in genome but not annotation
In BUSpaRse: kallisto | bustools R utilities
Description
Usage
Arguments
Value
Description
Check for chromosomes in genome but not annotation
Usage
1
check_genome(chrs_use, Genome)
Arguments
chrs_use
Character vector of names of chromosomes present in both the
annotation and the genome.
Genome
Either a BSgenome or a XStringSet
object of genomic sequences, where the intronic sequences will be extracted
from. Use genomeStyles to check which styles are supported for
your organism of interest; supported styles can be interconverted. If the
style in your genome or annotation is not supported, then the style of
chromosome names in the genome and annotation should be manually set to be
consistent.
Value
Nothing. Will emit message if the genome contains chromosomes absent
from the annotation.
BUSpaRse documentation built on March 3, 2021, 2:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Check for chromosomes in genome but not annotation
Usage
1 | check_genome(chrs_use, Genome)
|
Arguments
chrs_use |
Character vector of names of chromosomes present in both the annotation and the genome. |
Genome |
Either a |
Value
Nothing. Will emit message if the genome contains chromosomes absent from the annotation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.