check_tx: Check if transcript ID in transcriptome and annotation match
In BUSpaRse: kallisto | bustools R utilities
Description
Usage
Arguments
Value
Description
This function throws an error if transcript IDs in transcriptome and
annotation do not overlap. If they do overlap, this function will give a
message about transcript IDs that do not agree in the transcriptome and the
annotation
Usage
1
check_tx(tx_annot, tx)
Arguments
tx_annot
Character vector of transcript IDs from the annotation.
tx
Character vector of transcript IDs from the transcriptome.
Value
Character vector of the overlapping transcript IDs.
BUSpaRse documentation built on March 3, 2021, 2:01 a.m.
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Description Usage Arguments Value
Description
This function throws an error if transcript IDs in transcriptome and annotation do not overlap. If they do overlap, this function will give a message about transcript IDs that do not agree in the transcriptome and the annotation
Usage
1 | check_tx(tx_annot, tx)
|
Arguments
tx_annot |
Character vector of transcript IDs from the annotation. |
tx |
Character vector of transcript IDs from the transcriptome. |
Value
Character vector of the overlapping transcript IDs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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