check_tag_present: Check that a tag is present in attribute field of GTF/GFF
In BUSpaRse: kallisto | bustools R utilities
Description
Usage
Arguments
Value
Description
The attribute field of GTF/GFF files are very complicated and is very
inconsistent between sources. This function is to make sure that transcript
and gene IDs can be extracted properly.
Usage
1
check_tag_present(tags_use, tags, error = TRUE)
Arguments
tags_use
The tags to be checked.
tags
The tags present in attribute field.
error
Whether to throw an error for absent tags. If FALSE, then
a warning will be given.
Value
Error or warning if tag is absent.
BUSpaRse documentation built on March 3, 2021, 2:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
The attribute field of GTF/GFF files are very complicated and is very inconsistent between sources. This function is to make sure that transcript and gene IDs can be extracted properly.
Usage
1 | check_tag_present(tags_use, tags, error = TRUE)
|
Arguments
tags_use |
The tags to be checked. |
tags |
The tags present in attribute field. |
error |
Whether to throw an error for absent tags. If |
Value
Error or warning if tag is absent.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.