R/getPathwaysForSBML.R

In BiGGR: Constraint based modeling in R using metabolic reconstruction databases

Defines functions getPathwaysForSBML

Documented in getPathwaysForSBML

##A function to extract all relevant pathways from a model given a specific database
getPathwaysForSBML <- function(model, database){
all.pathways <- extractPathways(database)
unique(sapply(lapply(model@reactions, function(x)x@id), function(y)all.pathways[[y]]))
}

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