extrProtAAC: Amino Acid Composition Descriptor

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/501-extractProtAAC.R

Description

Amino Acid Composition Descriptor

Usage

1

Arguments

x

A character vector, as the input protein sequence.

Details

This function calculates the Amino Acid Composition descriptor (Dim: 20).

Value

A length 20 named vector

Author(s)

Min-feng Zhu <wind2zhu@163.com>, Nan Xiao <http://r2s.name>

References

M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.

See Also

See extrProtDC and extrProtTC for Dipeptide Composition and Tripeptide Composition descriptors.

Examples

1
2
x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtAAC(x)

BioMedR documentation built on Nov. 17, 2017, 10:08 a.m.