extrProtAAC: Amino Acid Composition Descriptor
In BioMedR: Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
View source: R/501-extractProtAAC.R
Description
Amino Acid Composition Descriptor
Usage
1
extrProtAAC(x)
Arguments
x
A character vector, as the input protein sequence.
Details
This function calculates the Amino Acid Composition descriptor (Dim: 20).
Value
A length 20 named vector
Author(s)
Min-feng Zhu <wind2zhu@163.com>,
Nan Xiao <http://r2s.name>
References
M. Bhasin, G. P. S. Raghava.
Classification of Nuclear Receptors Based on
Amino Acid Composition and Dipeptide Composition.
Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extrProtDC and extrProtTC
for Dipeptide Composition and Tripeptide Composition descriptors.
Examples
1
2
x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtAAC(x)
BioMedR documentation built on Nov. 17, 2017, 10:08 a.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
View source: R/501-extractProtAAC.R
Description
Amino Acid Composition Descriptor
Usage
1 | extrProtAAC(x)
|
Arguments
x |
A character vector, as the input protein sequence. |
Details
This function calculates the Amino Acid Composition descriptor (Dim: 20).
Value
A length 20 named vector
Author(s)
Min-feng Zhu <wind2zhu@163.com>, Nan Xiao <http://r2s.name>
References
M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extrProtDC and extrProtTC
for Dipeptide Composition and Tripeptide Composition descriptors.
Examples
1 2 | x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtAAC(x)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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