Files in BiocOncoTK

Bioconductor components for general cancer genomics

README.md

nonco3.png

pancanApp.png

NAMESPACE

DESCRIPTION

oREADME.md

brca4upset.png

microsatpan.png

build/vignette.rds

data/brcaMAE.rda

data/MSIsensor.10k.rda

data/map_tcga_ncit.rda

data/molpo_CDS.rda

data/pancan_sampTypeMap.rda

data/kang_DNArepair.rda

data/patient_to_tumor_code.rda

data/small_msi.rda

data/k23sig.rda

data/cell_70138.rda

data/annotTabs.rda

data/molpo_5utr.rda

data/icd10_c.rda

data/darmGBMcls.rda

data/fireMSI.rda

data/CCLE_DRUG_BROAD.rda

data/pert_70138.rda

data/dingMSI.rda

data/molpo_3utr.rda

data/molpo_WGS.rda

data/pancan.clin.varnames.rda

R/clue.R R/oncoprintISB.R R/SEbuilder.R R/bipg_tests.R R/utils.R R/loadPatel.R R/get_plate.R R/app.R R/rainfall3.R R/add_sym.R R/data.R R/mc3utils.R R/map_acronym_to_system.R R/pancan.R vignettes/curatedMSIData.Rmd vignettes/BiocOncoTK.Rmd

vignettes/nonco3.png

vignettes/pancanApp.png

vignettes/microsatpan2.png

vignettes/maptcga.Rmd

vignettes/brca4upset.png

vignettes/microsatpan.png

man/tumNorSet.Rd man/molpo_WGS.Rd man/log10pl1.Rd man/molpo_CDS.Rd man/brcaMAE.Rd man/darmGBMcls.Rd man/oncoPrintISB.Rd man/MSIsensor.10k.Rd man/pancan_tabulate.Rd man/query_clue.Rd man/mc3toGR.Rd man/fireMSI.Rd man/pancan_longname.Rd man/clueServiceNames.Rd man/reexports.Rd man/get_plates.Rd man/patient_to_tumor_code.Rd man/pertClasses.Rd man/cell_70138.Rd man/pancan_sampTypeMap.Rd man/bipg_tests.Rd man/TcgaMutCounts.Rd man/pancan_app.Rd man/pancan.clin.varnames.Rd man/pancan_clinicalTabVarnames.Rd man/pert_70138.Rd man/molpo_5utr.Rd man/ggFeatureSegs.Rd man/add_sym.Rd man/small_msi.Rd man/pancan_BQ.Rd man/k23sig.Rd man/utils.Rd man/viz_msi_raw.Rd man/ggFeatDens.Rd man/bindMSI.Rd man/molpo_3utr.Rd man/map_tcga_ncit.Rd man/annotTabs.Rd man/clueDemos.Rd man/ggMutDens.Rd man/multiviz.Rd man/featIDMapper.Rd man/TcgaNIndWithAnyMut.Rd man/icd10_c.Rd man/buildPancanSE.Rd man/replaceRownames.Rd man/CCLE_DRUG_BROAD.Rd man/loadPatel.Rd man/dingMSI.Rd man/kang_DNArepair.Rd tests/testthat.R tests/testthat/testBQ.R tests/testthat/test_dockstore_scripts.R

inst/doc/maptcga.html

inst/doc/curatedMSIData.Rmd inst/doc/maptcga.R

inst/doc/curatedMSIData.html

inst/doc/BiocOncoTK.Rmd inst/doc/curatedMSIData.R

inst/doc/BiocOncoTK.html

inst/doc/BiocOncoTK.R inst/doc/maptcga.Rmd

inst/pamphlets/blcaMAE.rda

inst/pamphlets/pancode.png

inst/pamphlets/bioccl1018.Rmd

inst/pamphlets/br3.png

inst/pamphlets/br2.png

inst/pamphlets/br1.png

inst/pamphlets/bioccl0518.Rmd

inst/pamphlets/microsatpan2.png

inst/pamphlets/panelCode.png

inst/pamphlets/bioccl.bib

inst/MSIsensor/MSIsensDing.csv.gz

inst/MSIsensor/dingMSI.rda

inst/scripts/do5utr_script.R inst/scripts/doCDS_script.R

inst/scripts/msireg/report_patients_by_txg.wdl

inst/scripts/msireg/rbind_csvs_to_RDS.R inst/scripts/msireg/exprByMSI_csv.R

inst/scripts/msireg/survey_tcga_tumors.wdl

inst/scripts/msireg/rbind_RDS_to_RDS.R

inst/mocks/nrasdf.rda

inst/mocks/ccleNRAS.rda

inst/mocks/NRAS_AHR.rda

BiocOncoTK documentation built on Nov. 8, 2020, 6:03 p.m.