bipg_tests: configure a bipartite graph relating tumor type to gene,...
In BiocOncoTK: Bioconductor components for general cancer genomics
Description
Usage
Arguments
Value
Examples
Description
configure a bipartite graph relating tumor type to gene, using graphNEL
Usage
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bipg_tests(
stattab,
genes_adverse = NA,
genes_favorable = NA,
gpar_cex = 0.65,
gpar_lwd = 0
)
Arguments
stattab
a data.frame with columns 'tumor', 'gene', and 'tstat'
genes_adverse
a vector of genes whose increased expression is
regarded as adverse
genes_favorable
a vector of genes whose increased expression is
regarded as favorable
gpar_cex
tune size of graph labels
gpar_lwd
tune appearance of node boundaries
Value
a graphNEL instance (graph package)
Examples
1
BiocOncoTK documentation built on Nov. 8, 2020, 6:03 p.m.
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Description Usage Arguments Value Examples
Description
configure a bipartite graph relating tumor type to gene, using graphNEL
Usage
1 2 3 4 5 6 7 | bipg_tests(
stattab,
genes_adverse = NA,
genes_favorable = NA,
gpar_cex = 0.65,
gpar_lwd = 0
)
|
Arguments
stattab |
a data.frame with columns 'tumor', 'gene', and 'tstat' |
genes_adverse |
a vector of genes whose increased expression is regarded as adverse |
genes_favorable |
a vector of genes whose increased expression is regarded as favorable |
gpar_cex |
tune size of graph labels |
gpar_lwd |
tune appearance of node boundaries |
Value
a graphNEL instance (graph package)
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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