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examples/heteroLociTrack-Ex.R
In BubbleTree: BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data
load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
load(system.file("data", "centromere.dat.rda", package="BubbleTree"))
load(system.file("data", "allHetero.lst.RData", package="BubbleTree"))
load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree"))
trackplotter <- new("TrackPlotter")
gr2 = centromere.dat
nn <- "sam2"
z1 <- heteroLociTrack(trackplotter, allCall.lst[[nn]]@result,
gr2, allHetero.lst[[nn]])
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BubbleTree documentation built on Nov. 8, 2020, 8:22 p.m.
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load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
load(system.file("data", "centromere.dat.rda", package="BubbleTree"))
load(system.file("data", "allHetero.lst.RData", package="BubbleTree"))
load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree"))
trackplotter <- new("TrackPlotter")
gr2 = centromere.dat
nn <- "sam2"
z1 <- heteroLociTrack(trackplotter, allCall.lst[[nn]]@result,
gr2, allHetero.lst[[nn]])
Try the BubbleTree package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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