CAFE: Chromosmal Aberrations Finder in Expression data

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

AuthorSander Bollen
Date of publicationNone
MaintainerSander Bollen <sander.h.bollen@gmail.com>
LicenseGPL-3
Version1.10.0

View on Bioconductor

Files in this package

CAFE/DESCRIPTION
CAFE/NAMESPACE
CAFE/NEWS
CAFE/R
CAFE/R/chromosomeStats.R CAFE/R/discontPlot.R CAFE/R/facetPlot.R CAFE/R/microProcess-improve.R CAFE/R/rawPlot.R CAFE/R/selectSamples.R CAFE/R/slidPlot.R
CAFE/build
CAFE/build/vignette.rds
CAFE/data
CAFE/data/CAFE_data.RData
CAFE/data/datalist
CAFE/inst
CAFE/inst/doc
CAFE/inst/doc/CAFE-manual.R
CAFE/inst/doc/CAFE-manual.Rnw
CAFE/inst/doc/CAFE-manual.pdf
CAFE/inst/unitTests
CAFE/inst/unitTests/test_CAFE_ProcessCels.R
CAFE/inst/unitTests/test_CAFE_armStats.R
CAFE/inst/unitTests/test_CAFE_bandStats.R
CAFE/inst/unitTests/test_CAFE_chromosomeStats.R
CAFE/inst/unitTests/test_CAFE_cliSubset.R
CAFE/inst/unitTests/test_CAFE_discontPlot.R
CAFE/inst/unitTests/test_CAFE_discontSmooth.R
CAFE/inst/unitTests/test_CAFE_facetPlot.R
CAFE/inst/unitTests/test_CAFE_guiSubset.R
CAFE/inst/unitTests/test_CAFE_rawPlot.R
CAFE/inst/unitTests/test_CAFE_slidPlot.R
CAFE/inst/unitTests/test_CAFE_slidSmooth.R
CAFE/man
CAFE/man/CAFE-package.Rd CAFE/man/CAFE.Rd CAFE/man/ProcessCels.Rd CAFE/man/armStats.Rd CAFE/man/bandStats.Rd CAFE/man/chromosomeStats.Rd CAFE/man/cliSubset.Rd CAFE/man/discontPlot.Rd CAFE/man/discontSmooth.Rd CAFE/man/facetPlot.Rd CAFE/man/fisher.method.Rd CAFE/man/guiSubset.Rd CAFE/man/rawPlot.Rd CAFE/man/slidPlot.Rd CAFE/man/slidSmooth.Rd
CAFE/tests
CAFE/tests/runTests.R
CAFE/vignettes
CAFE/vignettes/CAFE-manual.Rnw
CAFE/vignettes/manual.bib
CAFE/vignettes/simple.png

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