CAFE: CAFE data set

In CAFE: Chromosmal Aberrations Finder in Expression data

Description

Contains the dataset of GSE6561 and GSE10809 processed by ProcessCels

Usage

data("CAFE_data")

Format

A list containing two lists

whole

A list containing a dataframe for each sample

over

A list containing a dataframe for each sample, but with only those probes that are deemed overexpressed

The dataframes inside the lists contain the following columns:

ID

Affymetrix probe IDs

Sym

Gene symbols

Value

Log2 transformed expression values

LogRel

Log2 transformed relative expression values (to the median)

Loc

Chromosomal locations

Chr

Chromosome identifiers

Source

GSE6561: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6561

GSE10809: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10809

Examples

data("CAFE_data")

CAFE documentation built on Nov. 8, 2020, 7:44 p.m.