API for CAMERA
Collection of annotation related methods for mass spectrometry data

Global functions
.onLoad	Source code
.setCAMERAOptions	Source code
addFragments	Source code
add_same_oidscore	Source code
annotate	Man page
annotate,xcmsSet-method	Man page
annotateDiffreport	Man page Source code
annotateDiffreport,xsAnnotate-methods	Man page
annotateGrp	Source code
annotateGrpMPI	Source code
annotateGrpMPI2	Source code
calcCL	Source code
calcCL3	Source code
calcCaS	Man page
calcCaS,xsAnnotate-method	Man page
calcCiS	Man page
calcCiS,xsAnnotate-method	Man page
calcIsotopeMatrix	Source code
calcIsotopes	Man page
calcIsotopes,xsAnnotate-method	Man page
calcPC	Man page
calcPC,calcPC-method	Man page
calcPC,xsAnnotate-method	Man page
calcPC.hcs	Man page
calcPC.hcs,xsAnnotate-method	Man page
calcPC.lpc	Man page
calcPC.lpc,xsAnnotate-method	Man page
checkHypothese	Source code
checkIps	Source code
checkIsotopes	Source code
checkOidCausality	Source code
checkQuasimolion	Source code
class:ruleSet	Man page
cleanParallel	Man page Source code
combineHypothese	Source code
combinexsAnnos	Man page Source code
compoundLibraries	Man page Source code
compoundQuantiles	Man page Source code
compoundQuantiles-class	Man page
create.matrix	Source code
createHypothese	Source code
example	Source code
extractfragments	Source code
fastMatch	Source code
fast_corr	Source code
findAdducts	Man page
findAdducts,xsAnnotate-method	Man page
findIsotopes	Man page
findIsotopes,xsAnnotate-method	Man page
findIsotopesForPS	Source code
findIsotopesPspec	Source code
findIsotopesWithValidation	Man page
findIsotopesWithValidation,xsAnnotate-method	Man page
findKendrickMasses	Man page Source code
findNeutralLoss	Man page Source code
findNeutralLossSpecs	Man page Source code
fragments2metfrag	Source code
fragments2metfusion	Source code
generateRules	Man page
generateRules,ruleSet-method	Man page
getAllEICs	Source code
getAllPeakEICs	Man page
getAllPeakEICs,xsAnnotate-method	Man page
getAtomCount	Man page
getAtomCount,compoundQuantiles-method	Man page
getEIC	Source code
getEIC4Peaks	Source code
getEICs	Source code
getIsotopeCluster	Man page Source code
getIsotopeProportion	Man page
getIsotopeProportion,compoundQuantiles-method	Man page
getMaxScans	Source code
getPeaklist	Man page
getPeaklist,xsAnnotate-method	Man page
getPeaks	Source code
getPeaksIdxCol	Source code
getPeaks_selection	Source code
getReducedPeaklist	Man page
getReducedPeaklist,xsAnnotate-method	Man page
getderivativeIons	Source code Source code
getpspectra	Man page Source code
groupCorr	Man page
groupCorr,xsAnnotate-method	Man page
groupDen	Man page
groupDen,xsAnnotate-method	Man page
groupFWHM	Man page
groupFWHM,xsAnnotate-method	Man page
is.wholenumber	Source code
massDiffMatrix	Source code
massDiffMatrixNL	Source code
massWindowSizes	Man page Source code
mm14	Man page
msgfun.snowParallel	Source code
naOmit	Source code
percentOutput	Source code
plotEICs	Man page
plotEICs,xsAnnotate-method	Man page
plotEICs.xsAnnotate	Man page
plotPsSpectrum	Man page
plotPsSpectrum,xsAnnotate-method	Man page
plotPsSpectrum.xsAnnotate	Man page
psDist	Man page
psDist,CAMERA-method	Man page
psDist-methods	Man page
pspec2metfrag	Man page Source code
pspec2metfusion	Man page Source code
readLists	Man page
readLists,ruleSet-method	Man page
resolveFragmentConnections	Source code
ruleSet-class	Man page
setDefaultLists	Man page
setDefaultLists,ruleSet-method	Man page
setDefaultParams	Man page
setDefaultParams,ruleSet-method	Man page
setParams	Man page
setParams,ruleSet,numeric,numeric,numeric,numeric,numeric,numeri	Man page
show,ruleSet-method	Man page
show,xsAnnotate-method	Man page
xsAnnotate	Man page Source code
xsAnnotate-class	Man page