Man pages for CHETAH
Fast and accurate scRNA-seq cell type identification
| CHETAHclassifier | Identification of cell types aided by hierarchical clustering |
| CHETAHshiny | Launch a web page to interactively go trough the... |
| Classify | (Re)classify after running 'CHETAHclassifier' using a... |
| ClassifyReference | Use a reference dataset to classify itself. A good reference... |
| CorrelateReference | Correlate all reference profiles to each other using... |
| headneck_ref | A SingleCellExperiment with celltypes in the "celltypes"... |
| input_mel | A SingleCellExperiment on which CHEATHclassifier is run using... |
| PlotCHETAH | Plot the CHETAH classification on 2D visulization like t-SNE... |
| PlotTree | Plots the chetah classification tree with nodes numbered |
| PlotTSNE | Plots a variable on a t-SNE |
| RenameBelowNode | In the CHETAH classification, replace the name of a Node and... |
