API for CNVrd2
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
| Global functions | |
|---|---|
| .Random.seed | Man page |
| CNVrd2-class | Man page |
| CNVrd2-package | Man page |
| allGroups | Man page |
| bamFiles | Man page |
| calculateLDSNPandCNV | Man page Source code |
| ccl3l1data | Man page |
| clusteringCNVs-class | Man page |
| copynumberGroups | Man page |
| countReadInWindow | Man page |
| countReadInWindow,CNVrd2-method | Man page |
| countReadInWindow-methods | Man page |
| emnormalCNV | Man page |
| emnormalCNV,clusteringCNVs-method | Man page |
| emnormalCNV-methods | Man page |
| fcgr3bMXL | Man page |
| groupBayesianCNVs | Man page Source code |
| groupCNVs | Man page |
| groupCNVs,clusteringCNVs-method | Man page |
| groupCNVs-methods | Man page |
| identifyPolymorphicRegion | Man page |
| identifyPolymorphicRegion,CNVrd2-method | Man page |
| identifyPolymorphicRegion-methods | Man page |
| numericOrNULL-class | Man page |
| objectCNVrd2 | Man page |
| objectCluster | Man page |
| plotCNVrd2 | Man page |
| plotCNVrd2,CNVrd2-method | Man page |
| plotCNVrd2-methods | Man page |
| plotPolymorphicRegion | Man page |
| plotPolymorphicRegion,CNVrd2-method | Man page |
| plotPolymorphicRegion-methods | Man page |
| readCountMatrix | Man page |
| resultSegment | Man page |
| searchGroupCNVs | Man page |
| searchGroupCNVs,clusteringCNVs-method | Man page |
| searchGroupCNVs-methods | Man page |
| segmentSamples | Man page |
| segmentSamples,CNVrd2-method | Man page |
| segmentSamples-methods | Man page |
| segmentSamplesUsingPopInformation | Man page |
| segmentSamplesUsingPopInformation,CNVrd2-method | Man page |
| segmentSamplesUsingPopInformation-methods | Man page |
| vectorORfactor-class | Man page |
