plotCNVrd2: Plot traces of samples.

In CNVrd2: CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.

Description

Plot traces of samples.

Usage

plotCNVrd2(Object, ...)

Arguments

Object	An object of class CNVrd2.
...	Optional arguments.

Value

Plot

Note

Users can plot multiple samples simultaneously.

Author(s)

Hoang Tan Nguyen, Tony R Merriman and MA Black. [e-mail]

Examples

data(fcgr3bMXL)
##Obtain all information of CNVs
allGroups <- copynumberGroups$allGroups
###Obtain names of duplicate samples
duplicatedSamples <- rownames(allGroups[allGroups[, 2] > 2,])
###Plot the first duplicate samples
par(mfrow = c(3, 2))
for (ii in duplicatedSamples[1:6])  
plotCNVrd2(Object = objectCNVrd2,
           segmentObject = resultSegment,
           sampleName = ii)

CNVrd2 documentation built on Nov. 8, 2020, 5:30 p.m.