Files in CSSQ

Chip-seq Signal Quantifier Pipeline

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

R/getRegionCounts.R R/plotDist.R R/getComparisons.R R/tval.R R/calculatePval.R R/loadCountData.R R/getNewLabels.R R/getBgSubVal.R R/dbAnalyze.R R/preprocess.R R/ansTransform.R R/FC.R R/normalizeData.R R/kmeansNormalize.R vignettes/CSSQ.Rmd man/getRegionCounts.Rd man/preprocessData.Rd man/getBgSubVal.Rd man/getComparisons.Rd man/ansTransform.Rd man/calculatePvalue.Rd man/DBAnalyze.Rd man/getNewLabels.Rd man/calculateFC.Rd man/loadCountData.Rd man/kmeansNormalize.Rd man/plotDist.Rd man/normalizeData.Rd man/calculateTvalue.Rd inst/doc/CSSQ.R inst/doc/CSSQ.Rmd

inst/doc/CSSQ.html

inst/extdata/HSMM_IN_R2.bam

inst/extdata/sample_count_data.txt

inst/extdata/HSMM_IP_R2.bam

inst/extdata/HESC_IN_R1.bam

inst/extdata/chr19_regions.bed

inst/extdata/HESC_IP_R2.bam

inst/extdata/HSMM_IP_R1.bam

inst/extdata/HESC_IP_R1.bam

inst/extdata/sample_info.txt

inst/extdata/HSMM_IN_R1.bam

inst/extdata/HESC_IN_R2.bam

inst/scripts/exdata_info.txt

CSSQ documentation built on Nov. 8, 2020, 6:47 p.m.