Man pages for CSSQ
Chip-seq Signal Quantifier Pipeline
| ansTransform | Perform quantification and normalization of count data |
| calculateFC | Calculates Fold change values for the given label and... |
| calculatePvalue | Calculates P-value for the regions |
| calculateTvalue | Calculates modified T-statistics values for the given label... |
| DBAnalyze | Performs differential binding analysis |
| getBgSubVal | Perform quantification and normalization of count data |
| getComparisons | Identify possible combinations |
| getNewLabels | Labels the samples according to the combinations from... |
| getRegionCounts | Quantify region level count data |
| kmeansNormalize | Perform k-means clustering, normalize anscombe data and... |
| loadCountData | Load count data from input file. |
| normalizeData | Normalize anscombe transformed data |
| plotDist | Plot data distribution histograms |
| preprocessData | Wrapper function to preprocess the data |
