calculateFC: Calculates Fold change values for the given label and...
In CSSQ: Chip-seq Signal Quantifier Pipeline
Description
Usage
Arguments
Value
See Also
Description
This calculates the Fold change for the given comparison.
Usage
1
calculateFC(preprocessedData, label, comparison, numSamples)
Arguments
preprocessedData
A
RangedSummarizedExperiment-class
object from preprocessData.
label
A vector containing the labels to use for the samples in
preprocessedData.
comparison
A vector containing the comparison to be made.
Names here need to correspond to the sample groups in the sample file
(Eg. c("G1",G2") means the comparison G1/G2).
numSamples
Number of samples in the dataset.
Value
A vector that is the Fold change for the comparison and labels given.
See Also
DBAnalyze which calls this function
CSSQ documentation built on Nov. 8, 2020, 6:47 p.m.
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Description Usage Arguments Value See Also
Description
This calculates the Fold change for the given comparison.
Usage
1 | calculateFC(preprocessedData, label, comparison, numSamples)
|
Arguments
preprocessedData |
A
|
label |
A vector containing the labels to use for the samples in preprocessedData. |
comparison |
A vector containing the comparison to be made. Names here need to correspond to the sample groups in the sample file (Eg. c("G1",G2") means the comparison G1/G2). |
numSamples |
Number of samples in the dataset. |
Value
A vector that is the Fold change for the comparison and labels given.
See Also
DBAnalyze which calls this function
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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