load_ctd_dise: Function to load the '.tsv.gz' file for disease

In CTDquerier: Package for CTDbase data query, visualization and downstream analysis

Description

Function to load the .tsv.gz file for disease

Usage

load_ctd_dise(filename = "CTD_diseases.tsv.gz")

Arguments

filename

(default "CTD_diseases.tsv.gz") File with the chemicals downloaded from CTDbase.

Details

The field included in the file (CTD_diseases.tsv.gz) are:

1. DiseaseName

2. DiseaseID (MeSH or OMIM identifier)

3. Definition

4. AltDiseaseIDs (alternative identifiers; '|'-delimited list)

5. ParentIDs (identifiers of the parent terms; '|'-delimited list)

6. TreeNumbers (identifiers of the disease's nodes; '|'-delimited list)

7. ParentTreeNumbers (identifiers of the parent nodes; '|'-delimited list)

8. Synonyms ('|'-delimited list)

9. SlimMappings (MEDIC-Slim mappings; '|'-delimited list)

Value

A data.frame with the content of the file "CTD_genes.tsv.gz"

Examples

download_ctd_dise()
fdl <- load_ctd_dise()
dim( fdl )

CTDquerier documentation built on Oct. 31, 2019, 2:57 a.m.