query_ctd_gene: Function to query CTDbase using gene terminology ( Gene...
In CTDquerier: Package for CTDbase data query, visualization and downstream analysis
Description
Usage
Arguments
Value
Examples
View source: R/query_ctd_gene.R
Description
This function checks for CTDbase gene vocabulary and query CTDbase
for each one, downloading gene-gene interactions, chemicals
interactions, associated disease, associated KEGG pathways and
associated GO terms.
Usage
1
query_ctd_gene(terms, verbose = FALSE)
Arguments
terms
Character vector with the genes used in the query.
verbose
(default FALSE) If set to TRUE is shows relevant
information of each step.
Value
An object of class CTDdata.
Examples
1
rst <- query_ctd_gene( terms = c( "APP", "HMOX1A", "hmox1" ), verbose = TRUE )
CTDquerier documentation built on Oct. 31, 2019, 2:57 a.m.
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Description Usage Arguments Value Examples
View source: R/query_ctd_gene.R
Description
This function checks for CTDbase gene vocabulary and query CTDbase for each one, downloading gene-gene interactions, chemicals interactions, associated disease, associated KEGG pathways and associated GO terms.
Usage
1 | query_ctd_gene(terms, verbose = FALSE)
|
Arguments
terms |
Character vector with the genes used in the query. |
verbose |
(default |
Value
An object of class CTDdata.
Examples
1 | rst <- query_ctd_gene( terms = c( "APP", "HMOX1A", "hmox1" ), verbose = TRUE )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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